Study strengthens link between gene variants and bleeding risk in warfarin patients

By Cytochrome P450, Genetics Research, News, Pharmacogenetics

bleedingNew research offers more evidence for the connection between CYP2C9 and VKORC1 variants and increased bleeding risk in patients taking warfarin.

A large-scale study published in the March edition of the Lancet found that atrial fibrillation patients whose CYP2C9 and VKORC1 genetic variations made them highly sensitive to warfarin were nearly three times more likely to experience bleeding than those with normal sensitivity. Those who were still sensitive to warfarin, but less seriously so, were 1.3 times more likely to experience bleeding compared to normally sensitive patients while initiating therapy with the drug.

“…We showed clear and significant associations between CYP2C9 and VKORC1 genotypes and bleeding outcomes with warfarin,” study authors Mega et al. wrote.

Variations in the genes CYP2C9 and VKORC1 are both involved in how individuals respond to warfarin and account for about 40 percent of response variability, the study authors reported.  In August 2007 and 2010, the U.S. Food and Drug Administration revised the drug labeling for Coumadin, a brand name of warfarin, to add that patients with certain CYP2C9 and VKORC1 variants may need non-standard warfarin doses at the beginning of treatment.

Mega et al. genotyped more than 14,000 patients who took part in the study—almost 5,000 of whom were assigned to be on warfarin—and followed the patients for three years.

The authors compared clinical outcomes of patients on warfarin to those on edoxaban (Savaysa®), a newly approved anticoagulant medication that does not rely on the same genetically variable pathways as warfarin. Overall, the researchers found edoxaban treatment was associated with reduced rates of bleeding, including potentially life-threatening types of bleeding.

“This genetic analysis revealed that during the early time period, the reduction in bleeding seen with edoxaban versus warfarin was more pronounced in sensitive and highly sensitive responders than normal responders,” the authors concluded.

Despite increasingly clear evidence showing varied warfarin dosing levels are needed for patients with variations in the CYP2C9 and VKORC1 genes, patient genotyping to guide warfarin therapy has not become the standard of care. Though the study itself stops short of calling for genotyping before patients begin anticoagulant treatment, study lead author Dr. Jessica Mega told GenomeWeb the research could change clinical practice in favor of adopting pharmacogenetic testing to advise best anticoagulant options for patients starting such treatment.

This study gels with the results of a September 2014 meta-analysis that found the pharmacogenetic-guided dosing of warfarin and other similar medications (collectively referred to as VKAs) reduced major bleeding episodes by 52.5 percent.

More information about the pharmacogenetic tests Genelex offers, including one that focuses on CYP2C9 and VKORC1, is available here. Learn more about CYP2C9 and VKORC1’s influence on warfarin here.

Case Report: Boy becomes comatose after painkiller treatment

By Case Studies, Drug Interactions, News, Pharmacogenetics

One day after a 5½-year-old boy was released from the hospital for a routine tonsillectomy, he was comatose in the ER.

The boy had undergone surgery to remove his tonsils and adenoids to treat obstructive sleep apnea syndrome, a potentially serious sleep disorder that causes pauses in breathing and a blocked airway. The surgery was successful, and he was sent home that same evening.

At about 11 p.m. that night, however, he complained of increasing pain and was given 20 mg of the opioid painkiller, tramadol. The next morning, his parents found him lethargic and took him back to the hospital.

By the time they arrived at the ER, the boy was comatose and experiencing severe difficulty breathing. He received noninvasive ventilation therapy and naloxone, a medication used to counter the effects of opioid overdose. This treatment worked in minutes, bringing the boy out of the coma and allowing him to go home the next day.

Genotype testing on the boy after the fact revealed him to be an ultra rapid metabolizer for the CYP2D6 enzyme, which metabolizes tramadol. This meant the boy had multiple copies of the CYP2D6 gene and a greater-than-normal CYP2D6 function, so he metabolized tramadol extremely quickly.

This fast metabolism would usually cause a drug to be processed too quickly and have little or no effect. But tramadol is metabolized via CYP2D6 to a more potent active metabolite that contributes to tramadol’s analgesic effect. Tramadol being metabolized into too much of its active form can lead to severe difficulty in breathing and coma, both signs of an opioid overdose.

In other words: exactly what the boy experienced.

Tramadol has been put forward as an alternative to the painkiller codeine to treat mild-to-moderate pain in children after reports of codeine causing severe, and sometimes deadly, respiratory depression. Specifically, the case study authors report that pain management after pediatric tonsillectomies has become more challenging with the publication of restrictions on the use of codeine as a painkiller in these instances because of the risk of respiratory depression.

According to the case report authors, this is the first reported case of tramadol causing severe respiratory depression in a child post-tonsillectomy. In addition to his CYP2D6 ultra rapid metabolizer status, the boy’s history of obstructive sleep apnea may have also been a factor in increasing his sensitivity to tramadol.

The case authors concluded that although restricting the use of codeine in children is necessary, the question of what other alternatives exist in providing pain relief after tonsil surgery remains. The authors also say this case supports the clinical usefulness of CYP2D6 testing to determine a patient’s genetic makeup and help determine the best medications and doses to use for pain management.

Find the entire case report here.

Cyberattack may affect 11 million Premera insurance customers

By News, Patient

A cyberattack may have compromised the personal information of approximately 11 million customers insured by Premera Blue Cross.

On January 29, 2015, Premera discovered that attackers may have gained access to customer’s information dating as far back as 2002, including names, birth dates, Social Security numbers, addresses, bank-account information, and claim information, including clinical information, according to statement issued by Premera.

The health insurer discovered that the attack happened on May 5, 2014.

The company waited to announce the breach to give itself time to cleanse and secure its IT systems, Eric Earling, Premera’s vice president of corporate communications, told The Seattle Times.

“We completely recognize the frustration and concern it can cause to know there may have been unauthorized access to information,” Earling told the Times. “But there is no evidence that information was actually taken.”

This incident affected Premera Blue Cross, Premera Blue Cross Blue Shield of Alaska and Premera affiliate brands Vivacity and Connexion Insurance Solutions, Inc., according to the company’s statement. The attack also affected members of other Blue Cross Blue Shield plans who sought treatment in Washington or Alaska.

Premera is working with the FBI and Mandiant, a cybersecurity firm, to investigate the attack and fix the problem, according to the Times article. In the meantime, it’s mailing letters to those potentially affected by the cyberattack.

Premera will not be emailing customers regarding the attack. The company is warning customers that they might receive scam and phishing emails claiming to be from Premera.

Anyone who believes they are affected by this incident and have not received a letter by April 20 is advised to call Premera’s call center at 1-800-768-5817, or visit their website for more information.

The health insurer is also offering two years of free credit-monitoring and identity-theft protection services for those affected by the breach.

“All of us here at Premera have been affected by this attack, and we understand and share your concerns,” said Premera CEO Jeff Roe in a statement. “Please know that we’re committed to making sure you get the tools and assistance you need to help protect you.

The attack on Premera is not the only one in the past two months. In February, Anthem, the second largest U.S. insurer, announced that its IT systems were hacked, which it also discovered on January 29. It’s estimated that the attack on Anthem may have compromised similar information for 80 million customers.

Precision Medicine: The Future is Now

By Events, Genetics Research, Health Care IT, News, Personalized Medicine

By John C. Nelson, MD, MPH

The Affordable Care Act provides a blueprint for health system reform in America. While increasing access to care, the quality of that care must be maintained or improved; and, costs must decrease.

Innovation will be a key factor to bring about change. Personalized Medicine based on genetic information (or Precision Medicine as President Obama referred to it in his State of the Union address), has the potential to be one such key.

Many see the use of genetics as only a way to study and identify those predisposed to various rare diseases. Indeed, there is much promise in this approach. However, a more far-reaching use of genetic information would be to gain a better understanding of how patients are likely to respond to drugs.

Nearly all of us have taken, or will take, medications at some time in our lives. Every single one of us has unique, drug-metabolizing capabilities centered around the cytochrome P-450 (CYP) enzymes in our liver.  These enzymes are genetically determined and dictate how we break down medication – essentially, whether we are normal, rapid or poor metabolizers.

For example, when a “standard” dose of a drug is given to a patient, there is an expected result. However, if a drug is broken down too rapidly by a rapid metabolizer, the necessary level of medication may never be achieved. Conversely, if broken down too slowly by a poor metabolizer, unusually high concentrations of the drug may accumulate with toxic, even fatal, side effects as a result. Studies have shown that more than 75 percent of patients have variations in at least one CYP pathway, and therefore may not metabolize medications the way a caregiver might expect.

This is knowledge that should make all of us responsible for patient care stand up and pay attention.

If a clinician knew before a drug was prescribed how a patient would react, prescribing would take a major leap toward becoming a more exact science.

Enter the solution: genetic testing that tells us with more certainty before a drug is prescribed if it will be effective. The science of pharmacogenomics – the study of the many genes that can affect individual differences in drug response — has made this possible today.

EHRs and ePrescribing software already check for drug-drug interactions; however, without the ability to identify drug-gene interactions, important interactions may be missed.  Genetic testing, therefore, improves the ability to determine which patients are at risk.

Impacting Costs and Patient Outcomes

Approximately $3.5 billion is spent annually on extra medical costs as a result of adverse drug events (ADEs), which is when a patient is harmed by a reaction or complication from taking a medication. ADEs account for more than 700,000 annual ER visits for Medicare patients. Similarly, 2-8 percent of hospital admissions for Medicare patients occur due to ADEs, resulting in tremendous costs.

Per a 2014 study, current methods to detect ADEs miss more than a third of potential drug interactions, masked due to unknown patient genetics. This kind of information has prompted the FDA to recommend that drug-gene interactions should be considered as important as drug-drug interactions.

The Triple Aim describes improved care of the individual, improved health of the patient population and decreased per capita costs as goals. All of these objectives may be accomplished by the appropriate use of genetic testing.

The Role of Technology

Currently, most EHR, HIE and other healthcare software systems don’t have the ability to store and mine individual genetic data in a meaningful way. Clinical decision support software already exists that can compare a patient’s genetic capacity to metabolize medications against their medication list to determine the best medications and dosages for that patient.

A greater sense of urgency is needed to integrate this kind of information and technology into EHRs in a user-friendly, patient-centered way. This will improve the drug interaction alerts physicians consider when prescribing. It’s not enough to store this information merely as a lab report. Ideally, clinically-actionable genetic results like these should be a part of the patient face sheet – as discreet data – so it can quickly and easily be accessed and used, for example, when a patient visits the emergency room.

There is currently no magic bullet to transform the healthcare system in America. However, a large step towards accomplishing the goals of the Triple Aim can be achieved with the appropriate use and availability of genetic testing and making consideration of that useful clinical information available to physicians throughout the healthcare software ecosystem.

 

 

Dr. John C. Nelson is a practicing physician in obstetrics and gynecology at the Health Clinic of Utah. In practice since 1975, he became Medical Director at Genelex Corporation in 2013, and served as President of the American Medical Association from 2004-2005. Contact Dr. Nelson at 800-523-3080.

 

March: Time to get in the know about colorectal cancer

By Genetics Research, News, Patient, Personalized Medicine

colorectalBy Karina Mazhukhina

March is national colorectal cancer awareness month. This means if you or someone you love is 50 or older, now’s a perfect time to discuss screening with your physician.

Colorectal cancer is the second leading cancer killer in the U.S., of cancers that affect both men and women, according to the Centers for Disease Control and Prevention (CDC). Regular screening, however, can allow for the prevention of colon cancer before it starts. Since more than 90 percent of cases occur in both women and men who are age 50 and older, it’s important for individuals in this age range to get screened, even if no symptoms are noticed.

As part of the screening process, doctors look for abnormal growths in the colon or rectum. If any are found, they are often removed before they can turn into cancer. Screening also helps detect early-stage colorectal cancer, increasing the chances of a successful treatment.

People are at higher risk of developing colon cancer if they have:

  • A close relative who has/had abnormal growths in the colon or rectum, or a history of colorectal cancer
  • Inflammatory bowel disease, Crohn’s disease, or ulcerative colitis
  • Familial adenomatous polyposis (FAP), an inherited disorder in which growths or polyps may develop in the colon
  • Lynch syndrome, an inherited disorder that increases the risk of many types of cancer, including colorectal cancer

Though medical experts disagree whether diet plays a significant role in preventing colon cancer, researchers are still trying to find out whether diet and other lifestyle factors may be contributors.

Just as genetics can play a role in risk of colorectal cancer, emerging research has shown a link between variations in individual genetics and serious side effects of colorectal cancer treatments such as 5-fluorouracil (5–FU) and capecitabine.

People who have variations in the dihydropyrimidine dehydrogenase (DPYD) gene that result in reduced activity of the gene would process 5-FU and capecitabine more slowly than normal. This could potentially lead to toxicity, such as low white blood cell, platelets, and red blood cell counts, mucositis, neurotoxicity, hand-foot syndrome and diarrhea.

When doctors prescribe medicine, it’s important for them to know how a patient’s genetic variations may impact drug response. Knowing which drugs patients can effectively metabolize can create better-targeted treatments.

Genelex offers 28 tests for gene variations, including those for variations in the gene DPYD. Learn more here about the wide array of genetic tests Genelex has available, and how to obtain the necessary prescription from your doctor.

To find out more about colorectal cancer, visit the websites of the CDC and the Colon Cancer Alliance.

‘Roadmap’ for nationwide health care IT interoperability released

By Events, Health Care IT, News, YouScript Software

Can nationwide interoperability across health care information technology systems be achieved by 2017?

The Office of the National Coordinator for Health Information Technology (ONC) hopes so, and has released a roadmap for how to get there.

The ONC, the federal agency at the forefront of promoting health care IT, has published a draft of their “interoperability roadmap,” which members of the public can comment on until April 3. The agency hopes this will guide providers and professionals at every level of the health care ecosystem toward new standards for efficiently and securely sharing patient information to improve care.

“Interoperability” is defined in this context as the ability of systems to exchange and use electronic health information from other systems without special effort on the part of the user. The ONC says advancing interoperability is a vital step toward transforming health care delivery to better serve patients while saving providers money.

“ONC’s overarching goal for electronic health information exchange is for information to follow a patient where and when it is needed, across organizational, health IT developer and geographic boundaries,” the agency says on its website.

The roadmap is a 10-year plan describing barriers to interoperability in the current health care landscape, what the ONC would like to see improved, and proposed steps to take built into a timeline. The ONC lists the following “speed bumps” to interoperability:

  • Lack of standardization for health information
  • Difficulty aligning payment incentives
  • Misinterpretation and differences in existing privacy laws

The ONC lays out a set of several business and functional requirements the agency feels are needed to achieve its interoperability goals, but calls out four of the highest priority actions:

  1. Establish a coordinated governance framework and process for nationwide health information interoperability
  2. Improve technical standards and implementation guidance for sharing and using a common clinical data set
  3. Advance incentives for sharing health information according to common technical standards, starting with a common clinical data set
  4. Clarify privacy and security requirements that enable interoperability

Learn more about ONC’s interoperability initiative here.

 

Interoperability among health care systems will be a key topic at this April’s HIMSS conference and exhibition in Chicago. The YouScript Personalized Prescribing software will be represented at the HIMSS 2015 Interoperability Showcase, which allows visitors to see a clinical continuum of care and experience how YouScript integrates with multiple health care technology solutions.

The YouScript clinical decision support software catches 33% more clinically significant probable interactions missed by most EHRs and drug databases by incorporating patient genetics into interaction analysis, helping save on health care costs and reducing the likelihood of adverse drug events. YouScript APIs support integration with population health analytics, e-prescribing, EHRs and other software systems.

Find out how to connect with YouScript at HIMSS and how to register for the conference here.

Genelex executive to speak on 2015 SXSW discussion panel

By Events, News

Genelex will have a face at this year’s SXSW Interactive Festival, one of the world’s most well-known global technology conferences, in Austin, Texas, on March 16.

Kristine Ashcraft, Genelex’s Chief Operation Officer, will be part of a four-person panel discussion titled “Personalized Medicine: From a Vision Into a Plan”. The hour-long discussion will focus on how long it might take for the vision of personalized medicine to become a reality.

“They say it takes 17 years for medical research to make it to the patient; this is unacceptable, and we have the tools to shorten this timeline, especially in personalized medicine,” said Ashcraft, who joined Genelex in 2000.

“SXSW is known for attracting innovators that are pushing the envelope in many areas, and I am honored to speak and meet people that are interested in shortening the adoption curve.”

Ashcraft will join three other health care professionals in the field of personalized medicine on the discussion panel. The SXSW Interactive Festival is part of the larger, three-part SXSW conference, which also includes music and film festivals. Last year, more than 32,000 people attended the Interactive Conference alone.

Learn more about the conference and how to register here. Also, be sure to keep up with the personalized medicine discussion on Twitter by searching the hashtags #SXSW and #PersMed.

Talk of personalized medicine has received a boost recently after President Barack Obama’s State of the Union address, in which he called for a “precision medicine” initiative. The President made it clear that it is necessary and expedient to use modern technology to provide personalized treatment for all Americans, not just those suffering from complex diseases.

Genelex is proud to be leader in personalized medicine through its innovations in pharmacogenetic testing and analysis. Our YouScript Personalized Prescribing System pairs pharmacogenetic testing with the most comprehensive medication management software available.

Obamacare special enrollment period begins March 15

By News, Patient

By Karina Mazhukhina

To help consumers avoid tax penalties for not obtaining health insurance coverage this year, a special enrollment period will begin March 15 and end April 30.

To qualify, people are expected to confirm: they had to pay a penalty in 2014; cannot claim their income tax forms were the first to inform them of their penalty; and verify that they are not currently enrolled in a plan on HealthCare.gov, according to the Centers for Medicare and Medicaid Services (CMS). So far, the CMS has no estimates on how many people fall into this particular group.

Everyone who qualifies is encouraged to use their state’s health insurance marketplace to sign up.

“There remain millions of people who are unaware of the premium subsidies that make insurance affordable and who didn’t know about the tax penalty for failing to buy insurance,”  Ron Pollack, executive director of Families USA, told Modern Healthcare magazine. “This special enrollment period will therefore be a helpful, teachable moment and will enable many people to obtain health coverage and avoid future penalties.”

According to recent Obama administration projections, up to 6 million Americans did not enroll for coverage in 2014. However, most of them will be exempt from penalties, either related to their inability to pay or other life changing circumstances.

Anyone who is still uninsured by the end of the special enrollment period is subject to pay a penalty of $325, or 2 percent of their household income, whichever is higher. That’s $230 more than last year’s penalty, according to the CMS.

“We recognize that this is the first tax filing season where consumers may have to pay a fee or claim an exemption for not having health insurance coverage,” said CMS Administrator Marilyn Tavenner in a news release.

“Our priority is to make sure consumers understand the new requirement to enroll in health coverage and to provide those who were not aware or did not understand the requirement with an opportunity to enroll in affordable coverage this year.”

The United States Department of Health and Human Services hopes to have 9.1 million individuals who paid for their selected plans signed up during its second re-enrollment period, according to the Modern Healthcare article.

The CMS has more details on its website.

Large study links DPYD genetic variations and toxicity of cancer drug

By Genetics Research, News, Pharmacogenetics

DPYDThe association between variants of the DPYD gene and serious side effects from the cancer drug 5-fluorouracil (5–FU) in colon cancer patients has been bolstered by the results of recent large-scale study.

The largest study to date investigating the association between DPYD variants and 5-FU adverse drug events has found a statistically significant association between two variants that decrease DPYD activity and patients experiencing low white blood cell and blood platelet counts, nausea and vomiting, dehydration and diarrhea. The study appeared in the November issue of the Journal of the National Cancer Institute and was reported  first on the University of Florida’s Personalized Medicine Program blog.

Study authors Lee et al. found that 88 percent of study participants carrying the DPYD*2A variant experienced severe or worse adverse events related to 5-FU. The researchers also found 81.5 percent of carriers of the other variant, known as D949V, had severe 5-FU-related side effects.

According to the Clinical Pharmacogenetics Implementation Consortium (CPIC) guidelines for DPYD variants and 5-FU dosing, between 3 percent and 5 percent of people have decreased DPYD activity.

Specifically, Lee et al. linked the *2A variant with nausea/vomiting and neutropenia, or an abnormally low count of a type of white blood cell that fights off infections. The D949V variant was associated with dehydration, diarrhea, neutropenia, leukopenia (low white blood cell count), and thrombocytopenia (low blood platelet count). In an extreme case in the study, one patient with completely deficient DPYD activity died from complications of severe 5-FU toxicity.

The researchers also studied the I560s variant, also designated *13, and found two of four total study participants with this variant experienced severe side effects from 5-FU. Though a statistically significant association between severe side effects and this variant could not be demonstrated in this study because of the low number of *13 patients, other research supports an association. The current CPIC guidelines provide recommendations for patients who carry the *13 variant, in addition to *2A and D949V.

An editorial published in the same issue of the Journal of the National Cancer Institute calls Lee and colleagues’ work the “ultimate evidence” for DPYD variation as a major determinate in patient safety.

“The occurrence of these heritable variants poses considerable risk for patients and a challenge to patient management to preserve dose intensity,” writes Dr. Federico Innocenti, of the University of North Carolina Chapel Hill.

5-FU is one of the most common drugs used to treat colon cancer, which about one in 20 people will be diagnosed with in their lifetimes. According to the Colon Cancer Alliance, colon cancer is the second leading cause of cancer-related death in the U.S.

However, colon cancer can often be found early with regular screenings, with more than 90 percent of individuals diagnosed when the cancer is found in the local stage (confined to the colon or rectum) surviving more than five years. The colon cancer death rate has steadily dropped since the mid-1980s due in part to increased awareness and screenings, according to the Colon Cancer Alliance.

Genelex is dedicated to keeping up to date on the most relevant clinical research on genes that influence response to medications. To further this mission, Genelex has introduced 17 new genetic tests, including one that tests for the presence of these three common DPYD variants. Learn more here.

Mixing old and new: House-call doctor uses cutting-edge technology in patient care

By DNA Today Newsletter, News, Winter 2015, YouScript Software

As a physician whose sole business is house calls, Devang Patel, DO, racks up quite a few miles seeing patients in the Plainfield area of Illinois.

Dr. Patel begins every morning with a paper printout of his patient roster for the day, and more than a little technology. With his laptop and medical supplies in his car and the morning’s first patient address punched in to his GPS, Dr. Patel is ready to begin his day as a 21st century house-call doctor.

Dr. Patel’s desire to stick to house calls developed during his residency, when the idea of working in a clinic began to make him feel boxed in. After a stint at a practice that allowed him to do house calls, Dr. Patel said he fell in love with this truly personalized method of patient care.

Dr. Patel is board-certified in family medicine and focuses on geriatric care. His main goal is preventing hospitalizations in a patient population that he says is typically on four or more medications on a chronic basis—exactly the sort of population that would benefit from the YouScript Personalized Prescribing System.

“At first it felt unreal,” Dr. Patel said of the idea of YouScript drug-sensitivity testing.

“Genetic testing? I don’t have time to sit there figuring out, going through basic pharmacology for every single medication out there.”

But Dr. Patel said he soon learned the benefit of the technology, particularly the wallet-sized card his patients get and carry with them to show during a hospital stay or visit to a specialist. The card, included with the patient’s test results, lists variations in that patient’s enzyme-coding genes that will have an impact on drug metabolism.

“If they’re normal metabolizers for everything, we’re fine, and I don’t have to say anything special,” Dr. Patel said.

“But if they’re ultra-rapid or slow metabolizers of any one of the [gene] systems, which are commonly used as metabolic pathways, I tell them, ‘This is very important. Keep it next to your Medicare card. Make sure that wherever you go, if you’re [seen] by another doctor, tell them to look at that.’”

For most of his patients, Dr. Patel said he uses the companion YouScript software to review medications they may have been on for a long time and see if their genetics might put them at risk for any potentially serious drug-gene or drug-drug-gene interactions. Dr. Patel would then use YouScript’s alternative medication feature to see if other similar drugs could reduce that risk.

It’s this extra layer of protection, achieved through the use of technology, that allows Dr. Patel to optimize patient care while practicing the increasingly rare art of house-call medicine.

“Medication-related errors and adverse reactions [are] one of the most common reasons for hospitalization,” Dr. Patel said.

“[That] goes into our core philosophy; we want to prevent [those]. So anything we can do in anticipation is good.”